> 
> The certificate that is on there right now is the one that gets created when you install elogs.  I have tried 
> creating one with a windows server 2008 box with the CA role installed.  The certificate is created without issue 
> and I can install it on the server but when I try to restart the elog service it wont start until I put the 
> original server.crt and server.key file back into the ssl directory.  
> 

I don't know anything about Windows server CA, but eLog is very strict in the syntax of the CERTs.
I had to learn it the hard way when installing a chain CERT.

For server.crt and server.key it MUST NOT be a chain cert. Therefor you have to use chain.crt

Are the generated CERTs ASCII (with only one -----BEGIN CERTIFICATE----- and -----END CERTIFICATE----- in
server.crt 
and -----BEGIN RSA PRIVATE KEY----- and -----END RSA PRIVATE KEY----- in server.key)?

So the eLog generated keys should look like..

GS