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xmalloc error when filling entries and chaning page, posted by Antonio Iuliano on Wed Dec 12 10:44:57 2018
Re: xmalloc error when filling entries and chaning page, posted by Stefan Ritt on Fri Dec 21 13:00:50 2018
Message ID: 68872 Entry time: Wed Dec 12 10:44:57 2018 Reply to this: 68878
Icon:
Author:
Antonio Iuliano
Author Email:
antonio.iuliano@cern.ch
Category:
Question
OS:
Linux
ELOG Version:
3.1.2
Subject:
xmalloc error when filling entries and chaning page
Dear ELOG experts,
the ELOG server on our lab crashes continuosly, when we add a new entry or even if we click the arrows to navigate between entries. Following the FAQ on the website, I have used gdb and found the following error:
xmalloc: not enough memory
[Inferior 1 (process 23271) exited with code 01]
It should be then some allocation issue when we try to access to the entries, but I could not figure the nature of the issue. I was, however, able to reproduce it with a fresh ELOG installation and the same configuration file (ELOG cloned from git and installed today)
Could you please give me any suggestion? I attach here the configuration file we use.
Best regards,
Antonio Iuliano
Attachment 1:
elogd.cfg 124 kB | Hide | Hide all
[global]

Group SHiP-charm scanning = CHARM1, CHARM2, CHARM3, CHARM4, CHARM5, CHARM6
Group SHiP-charm analysis = SUMMARY
Group CHARM1          = CHARM1_RUN1,CHARM1_RUN2,CHARM1_RUN3,CHARM1_RUN4,CHARM1_RUN5,CHARM1_RUN6
Group CHARM2          = CHARM2_RUN1,CHARM2_RUN2,CHARM2_RUN3,CHARM2_RUN4,CHARM2_RUN5,CHARM2_RUN6
Group CHARM3          = CHARM3_RUN1,CHARM3_RUN2,CHARM3_RUN3
Group CHARM4          = CHARM4_RUN1,CHARM4_RUN2,CHARM4_RUN3
Group CHARM5          = CHARM5_RUN1,CHARM5_RUN2,CHARM5_RUN3
Group CHARM6          = CHARM6_RUN1,CHARM6_RUN2,CHARM6_RUN3
Group Decay Search    = DS_2012,DS_2011,DS_2010,DS_2009,DS_2008
Group Event Location  = 2012,2011,2010,2009,2008,temp
Group Other Task      = Weekly Meetings, reviews, Computing

port = 8080
Entries per page = 120
Thumbnail size = 50
Attachment lines = 30
Search all logbooks = 2
Default encoding = 1

Expand default = 0

#Time format = %Y-%m-%dT%H:%M:%S%z   ISO FORMAT
Time format = %Y-%m-%d %H:%M
Date format = %Y-%m-%d

###############################################################################
[SUMMARY]
Start page = ?mode=threaded&expand=0&sort=BrickID

Attributes = BrickID, Emulsion Type, Laboratory, Directory, Scanning, Linking, Alignment, Tracking, Vertexing, Note

Options BrickID = CHARM1-RUN1, CHARM1-RUN2, CHARM1_RUN3,CHARM1_RUN4,CHARM1_RUN5,CHARM1_RUN6, CHARM2_RUN1,CHARM2_RUN2,CHARM2_RUN3,CHARM2_RUN4,CHARM2_RUN5,CHARM2_RUN6,  CHARM3_RUN1,CHARM3_RUN2,CHARM3_RUN3, CHARM4_RUN1,CHARM4_RUN2,CHARM4_RUN3, CHARM5_RUN1,CHARM5_RUN2,CHARM5_RUN3, CHARM6_RUN1,CHARM6_RUN2,CHARM6_RUN3
ROptions Emulsion Type = Nagoya, Slavich
ROptions Laboratory = Napoli, Zurich

Show Attributes = BrickID, Emulsion Type, Laboratory, Directory, Scanning, Linking, Alignment, Tracking, Vertexing, Note
Show Attributes Edit = BrickID, Emulsion Type, Laboratory, Directory, Scanning, Linking, Alignment, Tracking, Vertexing, Note

Thread Display       = </td><td class="thread2" style="width:150px" > <a href=$message id><B>$BrickID</B></a> </td><td class="thread2" style="width:60px" > $Emulsion type </td><td class="thread2"  style="width:50px" style="width:128px"> $Laboratory </td><td class="thread2" style="width:60px" > $Directory </td><td class="thread2"  style="background-color:LightPink;"> $Scanning </td><td class="thread2"  style="width:60px"> $Linking </td><td class="thread2"  style="width:60px"> $Alignment </td><td class="thread2"  style="width:60px"> $Tracking </td><td class="thread2" style="width:55px"> <B>$Vertexing</B></td><td class="thread2R" >$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import  
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    = 
Fixed Attributes Edit  = BrickID
Fixed Attributes Reply = BrickID
Required Attributes  = BrickID
Theme                = eventlocation
Menu text            =
Filter Menu text     = 
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1


###############################################################################
[CHARM1_RUN1]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, SCAN DONE, TO RE-SCAN
ROptions Processing = no, PROC OK, TO RE-PROCESS
ROptions DeleteObx = no, OBX DELETED 
ROptions Linking = no, LINK OK
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:100px"> <B>$Microscope</B></td><td class="thread2R"  style="width:100px"> $Processing</td><td class="thread2R"  style="width:100px"> $DeleteObx</td><td class="thread2R"  style="width:100px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM1_RUN2]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM1_RUN3]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM1_RUN4]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM1_RUN5]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM1_RUN6]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM2_RUN1]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
List Menu text       = empty.html
List Menu commands   = New , Find , Select , Import , Config
Menu commands        = Back, New, Edit, Delete, Find
Locked Attributes    =
Fixed Attributes Edit  = PlateID
Fixed Attributes Reply = PlateID
Required Attributes  = PlateID
Theme                = eventlocation
Menu text            =
Filter Menu text     =
List Menu text       =
Collapse to last     = 1
Filter last entry = 1
Allow HTML = 1

###############################################################################
[CHARM2_RUN2]
Start page = ?mode=threaded&expand=0&sort=PlateID
Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Options PlateID = 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
#30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57
ROptions Microscope = mic2, mic3
ROptions Scanning = IN PROGRESS, DONE, TO RE-SCAN
ROptions Processing = no, DONE, TO RE-PROCESS
ROptions DeleteObx = no, DONE
ROptions Linking = no, DONE
Show Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note
Edit Attributes = PlateID, Author, Glass, Bottom, Base, Top, Scanning Path, Scanning, Microscope, Processing, DeleteObx, Linking, Note

Thread Display       = </td><td class="thread2R" style="width:50px" > <a href=$message id><B>$PlateID</B></a> </td><td class="thread2R" style="width:150px" > $Author </td><td class="thread2R"  style="width:50px" style="width:128px"> $Glass </td><td class="thread2R" style="width:60px" > $Bottom </td><td class="thread2R"  style="width:60px"> $Base </td><td class="thread2R"  style="width:60px"> $Top </td><td class="thread2R"  width=250px style="background-color:LightPink;"> $Scanning Path </td><td class="thread2"  style="width:100px"> $Scanning </td><td class="thread2" style="width:55px"> <B>$Microscope</B></td><td class="thread2R"  style="width:60px"> $Processing</td><td class="thread2R"  style="width:60px"> $DeleteObx</td><td class="thread2R"  style="width:60px"> $Linking </td><td class="thread2R">$Note</a>

Filter Menu text     = empty.html
... 1594 more lines ...
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